Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs7481662 chr11:123527362 C/A 1.74E-5 498 31.78 28.85 30.42 KM Plot
THCA rs7483687 chr11:123525201 C/G 2.83E-5 498 31.87 28.33 26.73 KM Plot
THCA rs74842241 chr14:23554781 G/C 5.77E-15 497 31.7 32.35 12.97 KM Plot
THCA rs749831 chr11:12093442 G/A 9.0E-5 486 31.43 31.4 25.72 KM Plot
THCA rs750507 chr10:90400367 A/G 2.97E-5 499 32.9 31.33 26.73 KM Plot
THCA rs75083200 chr1:41550202 T/G 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs75112944 chr16:79269783 G/A 2.35E-9 485 31.5 31.33 24.17 KM Plot
THCA rs75187666 chr8:60166863 C/T 6.32E-5 503 31.93 30.13 20.5 KM Plot
THCA rs7518880 chr1:41503820 C/A 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs75219158 chr10:104747594 C/T 9.04E-14 501 31.37 35.87 32.1 KM Plot
THCA rs75225232 chr16:79273036 C/T 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs75240063 chr21:47747698 C/T 8.67E-6 503 31.6 32.27 11.87 KM Plot
THCA rs7525193 chr1:41520712 T/C 1.22E-7 501 27.33 30.48 31.93 KM Plot
THCA rs7531344 chr1:41507431 C/G 1.21E-7 503 27.33 30.42 32.1 KM Plot
THCA rs75408870 chr7:44340850 T/C 1.56E-5 495 31.87 30.53 18.65 KM Plot